TPDB

3D PDB MODEL

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TPDB ID TPDB45333

Activity

Antiviral

Activity_category_statistics

Anti-infective peptides

Database_Source

dbAMP 3.0 DRAMP Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 93-aa standard natural antiviral peptide sequence curated from dbAMP 3.0, DRAMP, and Peptipedia, with an available 3D structural model.

Sequence

MKMFTVISYDIVDDQRRTSVMKVLKGYGVRVQYSVFEAILDAREFHDLSNQLRKIIDPGQDSIRCYRLDQVAAQRTVIYGIGLTTTDPTHYMV

FASTA

>TPDB45333|Antiviral|length=93
MKMFTVISYDIVDDQRRTSVMKVLKGYGVRVQYSVFEAILDAREFHDLSNQLRKIIDPGQDSIRCYRLDQVAAQRTVIYGIGLTTTDPTHYMV

Formula C477H762N132O141S5

Absent Amino Acids W

Common Amino Acids V

Mass 10762.40

PI 8.63

Basic Residues 14

Acidic Residues 11

Hydrophobic Residues 41

Net Charge +1

Boman Index 17.94

Hydrophobicity -0.176

Aliphatic Index 94.19

Half Life

Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 8940

Absorbance 280nm 83.07

Polar Residues 26

number

4

A

8

R

1

N

9

D

1

C

2

E

6

Q

5

G

2

H

8

I

6

L

4

K

4

M

3

F

2

P

5

S

7

T

0

W

6

Y

10

V

Amino Acid Distribution

A: 4 R: 8 N: 1 D: 9 C: 1 E: 2 Q: 6 G: 5 H: 2 I: 8 L: 6 K: 4 M: 4 F: 3 P: 2 S: 5 T: 7 W: 0 Y: 6 V: 10

Length

93

Formula

C477H762N132O141S5

Mass

10762.40

PI

8.63

Net Charge

+1

Boman Index

17.94

Hydrophobicity

-0.176

Evidence 1 Activity

Source & Reference

Database Source dbAMP 3.0 DRAMP

Other

Source Activity Label	Source Definition
Antiviral	dbAMP 3.0 classified under the Anti-viral function class.