TPDB

3D PDB MODEL

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TPDB ID TPDB45330

Activity

Antiviral

Activity_category_statistics

Anti-infective peptides

Database_Source

dbAMP 3.0 DRAMP Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 93-aa standard natural antiviral peptide sequence curated from dbAMP 3.0, DRAMP, and Peptipedia, with an available 3D structural model.

Sequence

MDFWLVCYDVRDDKRRRKLAKLLEQRCQRVQYSVFECPLPEKVLTDLLHRRWLKELNLKEDSLRAYPLQRQSRSQAKIFGSPDLYEPPDFLIL

FASTA

>TPDB45330|Antiviral|length=93
MDFWLVCYDVRDDKRRRKLAKLLEQRCQRVQYSVFECPLPEKVLTDLLHRRWLKELNLKEDSLRAYPLQRQSRSQAKIFGSPDLYEPPDFLIL

Formula C511H812N144O139S4

Absent Amino Acids

Common Amino Acids L

Mass 11325.19

PI 9.30

Basic Residues 19

Acidic Residues 14

Hydrophobic Residues 37

Net Charge +4

Boman Index 23.49

Hydrophobicity -0.628

Aliphatic Index 94.30

Half Life

Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 17085

Absorbance 280nm 150.86

Polar Residues 20

number

3

A

11

R

1

N

8

D

3

C

6

E

6

Q

1

G

1

H

2

I

16

L

7

K

1

M

4

F

6

P

5

S

1

T

2

W

4

Y

5

V

Amino Acid Distribution

A: 3 R: 11 N: 1 D: 8 C: 3 E: 6 Q: 6 G: 1 H: 1 I: 2 L: 16 K: 7 M: 1 F: 4 P: 6 S: 5 T: 1 W: 2 Y: 4 V: 5

Length

93

Formula

C511H812N144O139S4

Mass

11325.19

PI

9.30

Net Charge

+4

Boman Index

23.49

Hydrophobicity

-0.628

Evidence 1 Activity

Source & Reference

Database Source dbAMP 3.0 DRAMP

Other

Source Activity Label	Source Definition
Antiviral	dbAMP 3.0 classified under the Anti-viral function class.