TPDB

3D PDB MODEL

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TPDB ID TPDB45329

Activity

Antiviral

Activity_category_statistics

Anti-infective peptides

Database_Source

dbAMP 3.0 DRAMP Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 88-aa standard natural antiviral peptide sequence curated from dbAMP 3.0, DRAMP, and Peptipedia, with an available 3D structural model.

Sequence

MKLLVVYDVSDDSKRNKLANNLKKLGLERIQRSAFEGDIDSQRVKDLVRVVKLIVDTNTDIVHIIPLGIRDWERRIVIGREGLEEWLV

FASTA

>TPDB45329|Antiviral|length=88
MKLLVVYDVSDDSKRNKLANNLKKLGLERIQRSAFEGDIDSQRVKDLVRVVKLIVDTNTDIVHIIPLGIRDWERRIVIGREGLEEWLV

Formula C455H760N132O132S1

Absent Amino Acids C

Common Amino Acids LV

Mass 10223.90

PI 9.38

Basic Residues 17

Acidic Residues 15

Hydrophobic Residues 38

Net Charge +1

Boman Index 27.99

Hydrophobicity -0.216

Aliphatic Index 127.16

Half Life

Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 12490

Absorbance 280nm 122.16

Polar Residues 13

number

2

A

9

R

4

N

9

D

0

C

6

E

2

Q

5

G

1

H

9

I

11

L

7

K

1

M

1

F

1

P

4

S

2

T

2

W

1

Y

11

V

Amino Acid Distribution

A: 2 R: 9 N: 4 D: 9 C: 0 E: 6 Q: 2 G: 5 H: 1 I: 9 L: 11 K: 7 M: 1 F: 1 P: 1 S: 4 T: 2 W: 2 Y: 1 V: 11

Length

88

Formula

C455H760N132O132S1

Mass

10223.90

PI

9.38

Net Charge

+1

Boman Index

27.99

Hydrophobicity

-0.216

Evidence 1 Activity

Source & Reference

Database Source dbAMP 3.0 DRAMP

Other

Source Activity Label	Source Definition
Antiviral	dbAMP 3.0 classified under the Anti-viral function class.