TPDB

3D PDB MODEL

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TPDB ID TPDB45318

Activity

Antiviral

Activity_category_statistics

Anti-infective peptides

Database_Source

dbAMP 3.0 DRAMP Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 93-aa standard natural antiviral peptide sequence curated from dbAMP 3.0, DRAMP, and Peptipedia, with an available 3D structural model.

Sequence

MFYLISYDISVDQRRLKIAKLLEGYGQRVLESVFECDLELPAYRQLRQKLNRLIKDEEGDRLRIYRLCASCREQIEIIGDGPPPETSQDIYII

FASTA

>TPDB45318|Antiviral|length=93
MFYLISYDISVDQRRLKIAKLLEGYGQRVLESVFECDLELPAYRQLRQKLNRLIKDEEGDRLRIYRLCASCREQIEIIGDGPPPETSQDIYII

Formula C488H788N134O145S4

Absent Amino Acids HW

Common Amino Acids L

Mass 10980.68

PI 4.96

Basic Residues 14

Acidic Residues 16

Hydrophobic Residues 38

Net Charge -2

Boman Index 26.11

Hydrophobicity -0.365

Aliphatic Index 109.03

Half Life

Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 9065

Absorbance 280nm 82.55

Polar Residues 22

number

3

A

10

R

1

N

7

D

3

C

9

E

6

Q

5

G

0

H

11

I

12

L

4

K

1

M

2

F

4

P

5

S

1

T

0

W

6

Y

3

V

Amino Acid Distribution

A: 3 R: 10 N: 1 D: 7 C: 3 E: 9 Q: 6 G: 5 H: 0 I: 11 L: 12 K: 4 M: 1 F: 2 P: 4 S: 5 T: 1 W: 0 Y: 6 V: 3

Length

93

Formula

C488H788N134O145S4

Mass

10980.68

PI

4.96

Net Charge

-2

Boman Index

26.11

Hydrophobicity

-0.365

Evidence 1 Activity

Source & Reference

Database Source dbAMP 3.0 DRAMP

Other

Source Activity Label	Source Definition
Antiviral	dbAMP 3.0 classified under the Anti-viral function class.