TPDB

3D PDB MODEL

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TPDB ID TPDB45314

Activity

Antiviral

Activity_category_statistics

Anti-infective peptides

Database_Source

dbAMP 3.0 DRAMP Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 98-aa standard natural antiviral peptide sequence curated from dbAMP 3.0, DRAMP, and Peptipedia, with an available 3D structural model.

Sequence

AQIVKLGGDDGSLAFVPSKISVAAGEAIEFVNNAGFPHNIVFDEDAVPAGVDADAISYDDYLNSKGETVVRKLSTPGVYGVYCEPHAGAGMKMTITVQ

FASTA

>TPDB45314|Antiviral|length=98
AQIVKLGGDDGSLAFVPSKISVAAGEAIEFVNNAGFPHNIVFDEDAVPAGVDADAISYDDYLNSKGETVVRKLSTPGVYGVYCEPHAGAGMKMTITVQ

Formula C453H702N116O145S3

Absent Amino Acids W

Common Amino Acids AV

Mass 10189.43

PI 4.22

Basic Residues 8

Acidic Residues 13

Hydrophobic Residues 44

Net Charge -7

Boman Index 19.88

Hydrophobicity 0.098

Aliphatic Index 87.55

Half Life

Mammalian: 4.4 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 5960

Absorbance 280nm 58.49

Polar Residues 21

number

12

A

1

R

4

N

8

D

1

C

5

E

2

Q

11

G

2

H

6

I

4

L

5

K

2

M

4

F

5

P

6

S

4

T

0

W

4

Y

12

V

Amino Acid Distribution

A: 12 R: 1 N: 4 D: 8 C: 1 E: 5 Q: 2 G: 11 H: 2 I: 6 L: 4 K: 5 M: 2 F: 4 P: 5 S: 6 T: 4 W: 0 Y: 4 V: 12

Length

98

Formula

C453H702N116O145S3

Mass

10189.43

PI

4.22

Net Charge

-7

Boman Index

19.88

Hydrophobicity

0.098

Evidence 1 Activity

Source & Reference

Database Source dbAMP 3.0 DRAMP

Other

Source Activity Label	Source Definition
Antiviral	dbAMP 3.0 classified under the Anti-viral function class.