TPDB

3D PDB MODEL

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TPDB ID TPDB45266

Activity

Antiviral

Activity_category_statistics

Anti-infective peptides

Database_Source

dbAMP 3.0

Sequence_Type

standard

Has_Modification No

Description A 155-aa standard natural antiviral peptide sequence curated from dbAMP 3.0, with an available 3D structural model.

Sequence

MSTNKVNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIGGSDSVESANREIALWFKPEELLTEVKPNPNLYE

FASTA

>TPDB45266|Antiviral|length=155
MSTNKVNKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIGGSDSVESANREIALWFKPEELLTEVKPNPNLYE

Formula C754H1205N203O219S3

Absent Amino Acids C

Common Amino Acids V

Mass 16714.27

PI 9.14

Basic Residues 21

Acidic Residues 18

Hydrophobic Residues 66

Net Charge +1

Boman Index 36.64

Hydrophobicity -0.025

Aliphatic Index 94.26

Half Life

Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 9970

Absorbance 280nm 59.65

Polar Residues 27

number

12

A

8

R

7

N

5

D

0

C

13

E

1

Q

17

G

2

H

8

I

13

L

11

K

3

M

8

F

9

P

10

S

6

T

1

W

3

Y

18

V

Amino Acid Distribution

A: 12 R: 8 N: 7 D: 5 C: 0 E: 13 Q: 1 G: 17 H: 2 I: 8 L: 13 K: 11 M: 3 F: 8 P: 9 S: 10 T: 6 W: 1 Y: 3 V: 18

Length

155

Formula

C754H1205N203O219S3

Mass

16714.27

PI

9.14

Net Charge

+1

Boman Index

36.64

Hydrophobicity

-0.025

Evidence 1 Activity

Source & Reference

Database Source dbAMP 3.0

Other

Source Activity Label	Source Definition
Antiviral	dbAMP 3.0 classified under the Anti-viral function class.