TPDB

3D PDB MODEL

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TPDB ID TPDB45245

Activity

Antiviral

Activity_category_statistics

Anti-infective peptides

Database_Source

dbAMP 3.0

Sequence_Type

standard

Has_Modification No

Description A 189-aa standard natural antiviral peptide sequence curated from dbAMP 3.0, with an available 3D structural model.

Sequence

MAGSREVVAMDCEMVGLGPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMVGATPFAVARLEILQLLKGKLVVGHDLKHDFQALKEDMSGYTIYDTSTDRLLWREAKLDHCRRVSLRVLSERLLHKSIQNSLLGHSSVEDARATMELYQISQRIRARRGLPRLAVSDLEHHHHHH

FASTA

>TPDB45245|Antiviral|length=189
MAGSREVVAMDCEMVGLGPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMVGATPFAVARLEILQLLKGKLVVGHDLKHDFQALKEDMSGYTIYDTSTDRLLWREAKLDHCRRVSLRVLSERLLHKSIQNSLLGHSSVEDARATMELYQISQRIRARRGLPRLAVSDLEHHHHHH

Formula C934H1512N290O271S9

Absent Amino Acids

Common Amino Acids L

Mass 21428.60

PI 8.91

Basic Residues 40

Acidic Residues 23

Hydrophobic Residues 75

Net Charge +4

Boman Index 54.43

Hydrophobicity -0.333

Aliphatic Index 95.40

Half Life

Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 13075

Absorbance 280nm 61.02

Polar Residues 38

number

13

A

19

R

2

N

11

D

3

C

12

E

6

Q

13

G

14

H

7

I

24

L

7

K

6

M

3

F

5

P

14

S

8

T

1

W

5

Y

16

V

Amino Acid Distribution

A: 13 R: 19 N: 2 D: 11 C: 3 E: 12 Q: 6 G: 13 H: 14 I: 7 L: 24 K: 7 M: 6 F: 3 P: 5 S: 14 T: 8 W: 1 Y: 5 V: 16

Length

189

Formula

C934H1512N290O271S9

Mass

21428.60

PI

8.91

Net Charge

+4

Boman Index

54.43

Hydrophobicity

-0.333

Evidence 1 Activity

Source & Reference

Database Source dbAMP 3.0

Other

Source Activity Label	Source Definition
Antiviral	dbAMP 3.0 classified under the Anti-viral function class.