TPDB

3D PDB MODEL

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TPDB ID TPDB45242

Activity

Antiviral

Activity_category_statistics

Anti-infective peptides

Database_Source

dbAMP 3.0 Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 101-aa standard natural antiviral peptide sequence curated from dbAMP 3.0 and Peptipedia, with an available 3D structural model.

Sequence

LGKFSQTCYNSAIQGSVLTSTCERTNGGYNTSSIDLNSVIENVDGSLKWQSPNFIETCRNTQLAGSSELAAECKTRAQQFVSTKINLDDHIANIDGTLKYE

FASTA

>TPDB45242|Antiviral|length=101
LGKFSQTCYNSAIQGSVLTSTCERTNGGYNTSSIDLNSVIENVDGSLKWQSPNFIETCRNTQLAGSSELAAECKTRAQQFVSTKINLDDHIANIDGTLKYE

Formula C470H747N133O164S4

Absent Amino Acids M

Common Amino Acids S

Mass 11013.13

PI 4.74

Basic Residues 9

Acidic Residues 11

Hydrophobic Residues 32

Net Charge -3

Boman Index 20.94

Hydrophobicity -0.447

Aliphatic Index 75.35

Half Life

Mammalian: 5.5 hour Yeast: 3 min E.coli: 2 min

Extinction Coefficient Cystines 10220

Absorbance 280nm 92.80

Polar Residues 44

number

6

A

3

R

9

N

5

D

4

C

6

E

6

Q

7

G

1

H

7

I

8

L

5

K

0

M

3

F

1

P

12

S

10

T

1

W

3

Y

4

V

Amino Acid Distribution

A: 6 R: 3 N: 9 D: 5 C: 4 E: 6 Q: 6 G: 7 H: 1 I: 7 L: 8 K: 5 M: 0 F: 3 P: 1 S: 12 T: 10 W: 1 Y: 3 V: 4

Length

101

Formula

C470H747N133O164S4

Mass

11013.13

PI

4.74

Net Charge

-3

Boman Index

20.94

Hydrophobicity

-0.447

Evidence 1 Activity

Source & Reference

Database Source dbAMP 3.0

Other

Source Activity Label	Source Definition
Antiviral	dbAMP 3.0 classified under the Anti-viral function class.