TPDB

3D PDB MODEL

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TPDB ID TPDB45233

Activity

Antiviral

Activity_category_statistics

Anti-infective peptides

Database_Source

dbAMP 3.0

Sequence_Type

standard

Has_Modification No

Description A 261-aa standard natural antiviral peptide sequence curated from dbAMP 3.0, with an available 3D structural model.

Sequence

INTITFDAGNATINKYATFMESLRNEAKDPSLKCYGIPMLPNTNSTIKYLLVKLQGASLKTITLILRRNNLYVMGYSDPYDNKCRYHIFNDIKGTEYSDVENTLCPSTNPRVAKPINYNGLYPTLENKAGVTSRNQVQLGIQILSSDIGKISGQGSFTEKTEAKFLLVAIQMVPEAARFKYIENQVKTNFNRDFFPNDKVLELEENWGKISTAIHDAKNGALPKPLELKNADGTKWIVLRVDEIKPDVGLLKYVNGTCQTT

FASTA

>TPDB45233|Antiviral|length=261
INTITFDAGNATINKYATFMESLRNEAKDPSLKCYGIPMLPNTNSTIKYLLVKLQGASLKTITLILRRNNLYVMGYSDPYDNKCRYHIFNDIKGTEYSDVENTLCPSTNPRVAKPINYNGLYPTLENKAGVTSRNQVQLGIQILSSDIGKISGQGSFTEKTEAKFLLVAIQMVPEAARFKYIENQVKTNFNRDFFPNDKVLELEENWGKISTAIHDAKNGALPKPLELKNADGTKWIVLRVDEIKPDVGLLKYVNGTCQTT

Formula C1310H2083N349O394S8

Absent Amino Acids

Common Amino Acids L

Mass 29282.53

PI 8.98

Basic Residues 34

Acidic Residues 27

Hydrophobic Residues 101

Net Charge +5

Boman Index 52.81

Hydrophobicity -0.380

Aliphatic Index 88.54

Half Life

Mammalian: 20 hour Yeast: 30 min E.coli: >10 hour

Extinction Coefficient Cystines 29130

Absorbance 280nm 99.48

Polar Residues 82

number

15

A

9

R

24

N

13

D

4

C

14

E

8

Q

16

G

2

H

20

I

25

L

23

K

4

M

9

F

13

P

13

S

21

T

2

W

12

Y

14

V

Amino Acid Distribution

A: 15 R: 9 N: 24 D: 13 C: 4 E: 14 Q: 8 G: 16 H: 2 I: 20 L: 25 K: 23 M: 4 F: 9 P: 13 S: 13 T: 21 W: 2 Y: 12 V: 14

Length

261

Formula

C1310H2083N349O394S8

Mass

29282.53

PI

8.98

Net Charge

+5

Boman Index

52.81

Hydrophobicity

-0.380

Evidence 1 Activity

Source & Reference

Database Source dbAMP 3.0

Other

Source Activity Label	Source Definition
Antiviral	dbAMP 3.0 classified under the Anti-viral function class.