TPDB

3D PDB MODEL

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TPDB ID TPDB45229

Activity

Antiviral

Activity_category_statistics

Anti-infective peptides

Database_Source

dbAMP 3.0 Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 106-aa standard natural antiviral peptide sequence curated from dbAMP 3.0 and Peptipedia, with an available 3D structural model.

Sequence

GSHMSYADSSRNAVLTNGGRTLRAECRNADGNWVTSELDLDTCIGNPNGFLGWGMQNFSHSSEDIKLEEGGRKLTCRPKTVDGGFRERQGIDLNRIQNVNGRLVFQ

FASTA

>TPDB45229|Antiviral|length=106
GSHMSYADSSRNAVLTNGGRTLRAECRNADGNWVTSELDLDTCIGNPNGFLGWGMQNFSHSSEDIKLEEGGRKLTCRPKTVDGGFRERQGIDLNRIQNVNGRLVFQ

Formula C495H785N159O162S5

Absent Amino Acids

Common Amino Acids G

Mass 11715.95

PI 7.08

Basic Residues 15

Acidic Residues 13

Hydrophobic Residues 31

Net Charge +0

Boman Index 26.21

Hydrophobicity -0.728

Aliphatic Index 65.28

Half Life

Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 12615

Absorbance 280nm 107.67

Polar Residues 32

number

4

A

10

R

10

N

7

D

3

C

6

E

4

Q

14

G

2

H

4

I

9

L

3

K

2

M

4

F

2

P

8

S

6

T

2

W

1

Y

5

V

Amino Acid Distribution

A: 4 R: 10 N: 10 D: 7 C: 3 E: 6 Q: 4 G: 14 H: 2 I: 4 L: 9 K: 3 M: 2 F: 4 P: 2 S: 8 T: 6 W: 2 Y: 1 V: 5

Length

106

Formula

C495H785N159O162S5

Mass

11715.95

PI

7.08

Net Charge

+0

Boman Index

26.21

Hydrophobicity

-0.728

Evidence 1 Activity

Source & Reference

Database Source dbAMP 3.0

Other

Source Activity Label	Source Definition
Antiviral	dbAMP 3.0 classified under the Anti-viral function class.