TPDB

3D PDB MODEL

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TPDB ID TPDB45228

Activity

Antiviral

Activity_category_statistics

Anti-infective peptides

Database_Source

dbAMP 3.0 Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 114-aa standard natural antiviral peptide sequence curated from dbAMP 3.0 and Peptipedia, with an available 3D structural model.

Sequence

GSHMSFHVTAEDARIEVRDNRTILFARLRREDGEWNDASYELDQIIGNNDGHFQWGGQNFTETAEDIRFHPKEGAAEQPILRARLRDCNGEFHDRDVNLTEIVENVNGEFQAKF

FASTA

>TPDB45228|Antiviral|length=114
GSHMSFHVTAEDARIEVRDNRTILFARLRREDGEWNDASYELDQIIGNNDGHFQWGGQNFTETAEDIRFHPKEGAAEQPILRARLRDCNGEFHDRDVNLTEIVENVNGEFQAKF

Formula C572H867N175O184S2

Absent Amino Acids

Common Amino Acids E

Mass 13203.36

PI 4.64

Basic Residues 18

Acidic Residues 23

Hydrophobic Residues 39

Net Charge -10

Boman Index 42.15

Hydrophobicity -0.880

Aliphatic Index 65.09

Half Life

Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 12490

Absorbance 280nm 94.60

Polar Residues 24

number

9

A

11

R

9

N

10

D

1

C

13

E

5

Q

9

G

5

H

7

I

6

L

2

K

1

M

8

F

2

P

3

S

5

T

2

W

1

Y

5

V

Amino Acid Distribution

A: 9 R: 11 N: 9 D: 10 C: 1 E: 13 Q: 5 G: 9 H: 5 I: 7 L: 6 K: 2 M: 1 F: 8 P: 2 S: 3 T: 5 W: 2 Y: 1 V: 5

Length

114

Formula

C572H867N175O184S2

Mass

13203.36

PI

4.64

Net Charge

-10

Boman Index

42.15

Hydrophobicity

-0.880

Evidence 1 Activity

Source & Reference

Database Source dbAMP 3.0

Other

Source Activity Label	Source Definition
Antiviral	dbAMP 3.0 classified under the Anti-viral function class.