TPDB

3D PDB MODEL

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TPDB ID TPDB45219

Activity

Antiviral

Activity_category_statistics

Anti-infective peptides

Database_Source

dbAMP 3.0 Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 112-aa standard natural antiviral peptide sequence curated from dbAMP 3.0 and Peptipedia, with an available 3D structural model.

Sequence

GIDPFTKANSEACRDGLRAVMECRNVTHLLQQELTEAQKGFQDVEAQAATCNHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIADKK

FASTA

>TPDB45219|Antiviral|length=112
GIDPFTKANSEACRDGLRAVMECRNVTHLLQQELTEAQKGFQDVEAQAATCNHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIADKK

Formula C525H873N161O176S6

Absent Amino Acids WY

Common Amino Acids A

Mass 12449.04

PI 5.24

Basic Residues 18

Acidic Residues 19

Hydrophobic Residues 41

Net Charge -4

Boman Index 46.85

Hydrophobicity -0.595

Aliphatic Index 81.96

Half Life

Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 125

Absorbance 280nm 1.00

Polar Residues 28

number

14

A

7

R

5

N

6

D

3

C

13

E

9

Q

5

G

3

H

3

I

11

L

8

K

3

M

2

F

1

P

4

S

7

T

0

W

0

Y

8

V

Amino Acid Distribution

A: 14 R: 7 N: 5 D: 6 C: 3 E: 13 Q: 9 G: 5 H: 3 I: 3 L: 11 K: 8 M: 3 F: 2 P: 1 S: 4 T: 7 W: 0 Y: 0 V: 8

Length

112

Formula

C525H873N161O176S6

Mass

12449.04

PI

5.24

Net Charge

-4

Boman Index

46.85

Hydrophobicity

-0.595

Evidence 1 Activity

Source & Reference

Database Source dbAMP 3.0

Other

Source Activity Label	Source Definition
Antiviral	dbAMP 3.0 classified under the Anti-viral function class.