TPDB

3D PDB MODEL

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TPDB ID TPDB43547

Activity

Antiviral

Activity_category_statistics

Anti-infective peptides

Database_Source

AI4AVP dbAMP 3.0 DRAVP 2.0 Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 35-aa standard natural antiviral peptide sequence curated from AI4AVP, dbAMP 3.0, DRAVP 2.0, and other sources, with an available 3D structural model.

Sequence

PNDITLNNSVALDPIDISIELNKAKSDLEESKEWI

FASTA

>TPDB43547|Antiviral|length=35
PNDITLNNSVALDPIDISIELNKAKSDLEESKEWI

Formula C172H279N43O61

Absent Amino Acids RCQGHMFY

Common Amino Acids I

Mass 3925.36

PI 3.83

Basic Residues 3

Acidic Residues 8

Hydrophobic Residues 13

Net Charge -5

Boman Index 13.30

Hydrophobicity -0.463

Aliphatic Index 114.29

Half Life

Mammalian: >20 hour Yeast: >20 hour E.coli: ?

Extinction Coefficient Cystines 5500

Absorbance 280nm 140.11

Polar Residues 9

number

2

A

0

R

4

N

4

D

0

C

4

E

0

Q

0

G

0

H

5

I

4

L

3

K

0

M

0

F

2

P

4

S

1

T

1

W

0

Y

1

V

Amino Acid Distribution

A: 2 R: 0 N: 4 D: 4 C: 0 E: 4 Q: 0 G: 0 H: 0 I: 5 L: 4 K: 3 M: 0 F: 0 P: 2 S: 4 T: 1 W: 1 Y: 0 V: 1

Length

35

Formula

C172H279N43O61

Mass

3925.36

PI

3.83

Net Charge

-5

Boman Index

13.30

Hydrophobicity

-0.463

Evidence 1 Activity

Source & Reference

Database Source dbAMP 3.0 DRAVP 2.0

Other

Source Activity Label	Source Definition
Antiviral	dbAMP 3.0 classified under the Anti-viral function class.