TPDB

3D PDB MODEL

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TPDB ID TPDB42062

Activity

Anticancer

Activity_category_statistics

Cancer-related peptides

Database_Source

dbACP

Sequence_Type

standard

Has_Modification No

Description A 26-aa standard natural anticancer peptide sequence curated from dbACP, with an available 3D structural model.

Sequence

MRPEIWFAQEADRAGDEFNAYYARRV

FASTA

>TPDB42062|Anticancer|length=26
MRPEIWFAQEADRAGDEFNAYYARRV

Formula C141H205N41O41S1

Absent Amino Acids CHLKST

Common Amino Acids A

Mass 3162.49

PI 4.72

Basic Residues 4

Acidic Residues 5

Hydrophobic Residues 13

Net Charge -1

Boman Index 5.91

Hydrophobicity -0.877

Aliphatic Index 45.38

Half Life

Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 8480

Absorbance 280nm 268.14

Polar Residues 4

number

5

A

4

R

1

N

2

D

0

C

3

E

1

Q

1

G

0

H

1

I

0

L

0

K

1

M

2

F

1

P

0

S

0

T

1

W

2

Y

1

V

Amino Acid Distribution

A: 5 R: 4 N: 1 D: 2 C: 0 E: 3 Q: 1 G: 1 H: 0 I: 1 L: 0 K: 0 M: 1 F: 2 P: 1 S: 0 T: 0 W: 1 Y: 2 V: 1

Length

26

Formula

C141H205N41O41S1

Mass

3162.49

PI

4.72

Net Charge

-1

Boman Index

5.91

Hydrophobicity

-0.877

Evidence 1 Activity

Source & Reference

Database Source dbACP