TPDB

3D PDB MODEL

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TPDB ID TPDB39057

Activity

Toxicity

Activity_category_statistics

Toxicity and safety peptides

Database_Source

Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 89-aa standard natural toxicity peptide sequence curated from Peptipedia, with an available 3D structural model.

Sequence

VTCELETDVCATMTGSDLTEICDCTNGGCTRDDDHKISVGDVALFTCQQISDFDDCTGDQHLVDEDFTQVNCKCPNGNYQAGGSAGIVC

FASTA

>TPDB39057|Toxicity|length=89
VTCELETDVCATMTGSDLTEICDCTNGGCTRDDDHKISVGDVALFTCQQISDFDDCTGDQHLVDEDFTQVNCKCPNGNYQAGGSAGIVC

Formula C384H599N107O148S11

Absent Amino Acids W

Common Amino Acids D

Mass 9435.27

PI 3.56

Basic Residues 5

Acidic Residues 17

Hydrophobic Residues 24

Net Charge -14

Boman Index 25.19

Hydrophobicity -0.239

Aliphatic Index 62.36

Half Life

Mammalian: 100 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 2115

Absorbance 280nm 22.42

Polar Residues 34

number

4

A

1

R

4

N

13

D

10

C

4

E

5

Q

9

G

2

H

4

I

4

L

2

K

1

M

3

F

1

P

4

S

10

T

0

W

1

Y

7

V

Amino Acid Distribution

A: 4 R: 1 N: 4 D: 13 C: 10 E: 4 Q: 5 G: 9 H: 2 I: 4 L: 4 K: 2 M: 1 F: 3 P: 1 S: 4 T: 10 W: 0 Y: 1 V: 7

Length

89

Formula

C384H599N107O148S11

Mass

9435.27

PI

3.56

Net Charge

-14

Boman Index

25.19

Hydrophobicity

-0.239

Evidence 1 Activity

Source & Reference

Database Source NA