TPDB

3D PDB MODEL

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TPDB ID TPDB39021

Activity

Toxicity

Activity_category_statistics

Toxicity and safety peptides

Database_Source

Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 88-aa standard natural toxicity peptide sequence curated from Peptipedia, with an available 3D structural model.

Sequence

VRRSPSTLPYCCGHSRDCEICPAVKRDVDLFLTGTPDEYVEQVAQYNALPVVLENARILKNCVDAKMTEEDKENALSVLDKIYTSPLC

FASTA

>TPDB39021|Toxicity|length=88
VRRSPSTLPYCCGHSRDCEICPAVKRDVDLFLTGTPDEYVEQVAQYNALPVVLENARILKNCVDAKMTEEDKENALSVLDKIYTSPLC

Formula C427H688N116O137S7

Absent Amino Acids W

Common Amino Acids LV

Mass 9863.28

PI 4.64

Basic Residues 11

Acidic Residues 14

Hydrophobic Residues 33

Net Charge -4

Boman Index 26.70

Hydrophobicity -0.253

Aliphatic Index 89.66

Half Life

Mammalian: 100 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 6335

Absorbance 280nm 64.23

Polar Residues 26

number

6

A

5

R

4

N

7

D

6

C

7

E

2

Q

2

G

1

H

3

I

9

L

5

K

1

M

1

F

6

P

5

S

5

T

0

W

4

Y

9

V

Amino Acid Distribution

A: 6 R: 5 N: 4 D: 7 C: 6 E: 7 Q: 2 G: 2 H: 1 I: 3 L: 9 K: 5 M: 1 F: 1 P: 6 S: 5 T: 5 W: 0 Y: 4 V: 9

Length

88

Formula

C427H688N116O137S7

Mass

9863.28

PI

4.64

Net Charge

-4

Boman Index

26.70

Hydrophobicity

-0.253

Evidence 1 Activity

Source & Reference

Database Source NA