TPDB

3D PDB MODEL

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TPDB ID TPDB38978

Activity

Toxicity

Activity_category_statistics

Toxicity and safety peptides

Database_Source

Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 64-aa standard natural toxicity peptide sequence curated from Peptipedia, with an available 3D structural model.

Sequence

VRDAYIAKPHNCVYECARNEYCNDLCTKDGAKSGYCQWVGKYGNGCWCIELPDNVPIRIPGNCH

FASTA

>TPDB38978|Toxicity|length=64
VRDAYIAKPHNCVYECARNEYCNDLCTKDGAKSGYCQWVGKYGNGCWCIELPDNVPIRIPGNCH

Formula C312H470N90O93S8

Absent Amino Acids MF

Common Amino Acids C

Mass 7226.19

PI 6.85

Basic Residues 9

Acidic Residues 7

Hydrophobic Residues 21

Net Charge -0

Boman Index 11.44

Hydrophobicity -0.523

Aliphatic Index 60.94

Half Life

Mammalian: 100 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 18950

Absorbance 280nm 262.24

Polar Residues 22

number

4

A

3

R

6

N

4

D

8

C

3

E

1

Q

6

G

2

H

4

I

2

L

4

K

0

M

0

F

4

P

1

S

1

T

2

W

5

Y

4

V

Amino Acid Distribution

A: 4 R: 3 N: 6 D: 4 C: 8 E: 3 Q: 1 G: 6 H: 2 I: 4 L: 2 K: 4 M: 0 F: 0 P: 4 S: 1 T: 1 W: 2 Y: 5 V: 4

Length

64

Formula

C312H470N90O93S8

Mass

7226.19

PI

6.85

Net Charge

-0

Boman Index

11.44

Hydrophobicity

-0.523

Evidence 1 Activity

Source & Reference

Database Source NA