TPDB

3D PDB MODEL

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TPDB ID TPDB38972

Activity

Toxicity

Activity_category_statistics

Toxicity and safety peptides

Database_Source

Peptipedia

Sequence_Type

modified_plain

Has_Modification Yes

Description A 65-aa modified toxicity peptide sequence curated from Peptipedia, with an available 3D structural model.

Modification

Modified, details unspecified

Sequence

VRDAYIAKPENCVYECATNEYCNKLCTDNGAESGYCQWVGRYGNACXCIKLPDRVPIRVWGKCHG

FASTA

>TPDB38972|Toxicity|length=65
VRDAYIAKPENCVYECATNEYCNKLCTDNGAESGYCQWVGRYGNACXCIKLPDRVPIRVWGKCHG

Formula C310H474N90O93S8

Absent Amino Acids MF

Common Amino Acids C

Mass 7206.20

PI 7.49

Basic Residues 9

Acidic Residues 7

Hydrophobic Residues 22

Net Charge +1

Boman Index 11.56

Hydrophobicity -0.445

Aliphatic Index 60.00

Half Life

Mammalian: 100 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 18950

Absorbance 280nm 262.97

Polar Residues 22

number

5

A

4

R

5

N

3

D

8

C

4

E

1

Q

6

G

1

H

3

I

2

L

4

K

0

M

0

F

3

P

1

S

2

T

2

W

5

Y

5

V

Amino Acid Distribution

A: 5 R: 4 N: 5 D: 3 C: 8 E: 4 Q: 1 G: 6 H: 1 I: 3 L: 2 K: 4 M: 0 F: 0 P: 3 S: 1 T: 2 W: 2 Y: 5 V: 5

Length

65

Formula

C310H474N90O93S8

Mass

7206.20

PI

7.49

Net Charge

+1

Boman Index

11.56

Hydrophobicity

-0.445

Evidence 1 Activity

Source & Reference

Database Source NA