TPDB

3D PDB MODEL

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TPDB ID TPDB38797

Activity

Toxicity

Activity_category_statistics

Toxicity and safety peptides

Database_Source

Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 64-aa standard natural toxicity peptide sequence curated from Peptipedia, with an available 3D structural model.

Sequence

VKDGYIVDDRNCTYFCGRNAYCNEECTKLKGESGYCQWASPYGNACYCYKVPDHVRTKGPGRCN

FASTA

>TPDB38797|Toxicity|length=64
VKDGYIVDDRNCTYFCGRNAYCNEECTKLKGESGYCQWASPYGNACYCYKVPDHVRTKGPGRCN

Formula C311H464N90O97S8

Absent Amino Acids M

Common Amino Acids C

Mass 7272.13

PI 7.84

Basic Residues 10

Acidic Residues 7

Hydrophobic Residues 18

Net Charge +2

Boman Index 12.33

Hydrophobicity -0.847

Aliphatic Index 35.00

Half Life

Mammalian: 100 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 16430

Absorbance 280nm 225.93

Polar Residues 26

number

3

A

4

R

5

N

4

D

8

C

3

E

1

Q

7

G

1

H

1

I

1

L

5

K

0

M

1

F

3

P

2

S

3

T

1

W

7

Y

4

V

Amino Acid Distribution

A: 3 R: 4 N: 5 D: 4 C: 8 E: 3 Q: 1 G: 7 H: 1 I: 1 L: 1 K: 5 M: 0 F: 1 P: 3 S: 2 T: 3 W: 1 Y: 7 V: 4

Length

64

Formula

C311H464N90O97S8

Mass

7272.13

PI

7.84

Net Charge

+2

Boman Index

12.33

Hydrophobicity

-0.847

Evidence 1 Activity

Source & Reference

Database Source NA