TPDB

3D PDB MODEL

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TPDB ID TPDB38757

Activity

Toxicity

Activity_category_statistics

Toxicity and safety peptides

Database_Source

Peptipedia

Sequence_Type

modified_plain

Has_Modification Yes

Description A 38-aa modified toxicity peptide sequence curated from Peptipedia, with an available 3D structural model.

Modification

Modified, details unspecified

Sequence

VGINVKCKHSGQCLKPCKDAGMRFGKCINGKCDCTPKZ

FASTA

>TPDB38757|Toxicity|length=38
VGINVKCKHSGQCLKPCKDAGMRFGKCINGKCDCTPKZ

Formula C165H280N52O47S7

Absent Amino Acids EWY

Common Amino Acids K

Mass 3968.78

PI 9.25

Basic Residues 9

Acidic Residues 2

Hydrophobic Residues 8

Net Charge +6

Boman Index 9.79

Hydrophobicity -0.434

Aliphatic Index 48.68

Half Life

Mammalian: 100 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 375

Absorbance 280nm 9.45

Polar Residues 11

number

1

A

1

R

2

N

2

D

6

C

0

E

1

Q

5

G

1

H

2

I

1

L

7

K

1

M

1

F

2

P

1

S

1

T

0

W

0

Y

2

V

Amino Acid Distribution

A: 1 R: 1 N: 2 D: 2 C: 6 E: 0 Q: 1 G: 5 H: 1 I: 2 L: 1 K: 7 M: 1 F: 1 P: 2 S: 1 T: 1 W: 0 Y: 0 V: 2

Length

38

Formula

C165H280N52O47S7

Mass

3968.78

PI

9.25

Net Charge

+6

Boman Index

9.79

Hydrophobicity

-0.434

Evidence 1 Activity

Source & Reference

Database Source NA