TPDB

3D PDB MODEL

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TPDB ID TPDB38573

Activity

Toxicity

Activity_category_statistics

Toxicity and safety peptides

Database_Source

Peptipedia ToxinPred 3.0

Sequence_Type

standard

Has_Modification No

Description A 29-aa standard natural toxicity peptide sequence curated from Peptipedia and ToxinPred 3.0, with an available 3D structural model.

Sequence

TSNQITRGVWDECCKDPQCRQNHMQHCPA

FASTA

>TPDB38573|Toxicity|length=29
TSNQITRGVWDECCKDPQCRQNHMQHCPA

Formula C136H213N47O45S5

Absent Amino Acids LFY

Common Amino Acids CQ

Mass 3386.78

PI 7.01

Basic Residues 5

Acidic Residues 3

Hydrophobic Residues 5

Net Charge +0

Boman Index 10.04

Hydrophobicity -1.210

Aliphatic Index 26.90

Half Life

Mammalian: 7.2 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 5750

Absorbance 280nm 169.78

Polar Residues 13

number

1

A

2

R

2

N

2

D

4

C

1

E

4

Q

1

G

2

H

1

I

0

L

1

K

1

M

0

F

2

P

1

S

2

T

1

W

0

Y

1

V

Amino Acid Distribution

A: 1 R: 2 N: 2 D: 2 C: 4 E: 1 Q: 4 G: 1 H: 2 I: 1 L: 0 K: 1 M: 1 F: 0 P: 2 S: 1 T: 2 W: 1 Y: 0 V: 1

Length

29

Formula

C136H213N47O45S5

Mass

3386.78

PI

7.01

Net Charge

+0

Boman Index

10.04

Hydrophobicity

-1.210

Evidence 1 Activity

Source & Reference

Database Source NA