TPDB

3D PDB MODEL

Drag to rotate. Click a residue or atom to inspect it; the selected residue is highlighted in amber.

TPDB ID TPDB38474

Activity

Toxicity

Activity_category_statistics

Toxicity and safety peptides

Database_Source

Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 97-aa standard natural toxicity peptide sequence curated from Peptipedia, with an available 3D structural model.

Sequence

TKVDLTVEKGSDAKTLVLNIKYTRPGDTLAEVELRQHGSEEWEPMTKKGNLWEVKSAKPLTGPMNFRFLSKGGMKNVFDEVIPTAFTVGKTYTPEYN

FASTA

>TPDB38474|Toxicity|length=97
TKVDLTVEKGSDAKTLVLNIKYTRPGDTLAEVELRQHGSEEWEPMTKKGNLWEVKSAKPLTGPMNFRFLSKGGMKNVFDEVIPTAFTVGKTYTPEYN

Formula C490H773N127O148S3

Absent Amino Acids C

Common Amino Acids KT

Mass 10907.47

PI 9.14

Basic Residues 15

Acidic Residues 13

Hydrophobic Residues 34

Net Charge +1

Boman Index 27.95

Hydrophobicity -0.602

Aliphatic Index 68.25

Half Life

Mammalian: 7.2 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 15470

Absorbance 280nm 141.83

Polar Residues 24

number

4

A

3

R

5

N

4

D

0

C

9

E

1

Q

8

G

1

H

2

I

8

L

11

K

3

M

4

F

6

P

4

S

11

T

2

W

3

Y

8

V

Amino Acid Distribution

A: 4 R: 3 N: 5 D: 4 C: 0 E: 9 Q: 1 G: 8 H: 1 I: 2 L: 8 K: 11 M: 3 F: 4 P: 6 S: 4 T: 11 W: 2 Y: 3 V: 8

Length

97

Formula

C490H773N127O148S3

Mass

10907.47

PI

9.14

Net Charge

+1

Boman Index

27.95

Hydrophobicity

-0.602

Evidence 1 Activity

Source & Reference

Database Source NA