TPDB

3D PDB MODEL

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TPDB ID TPDB38134

Activity

Toxicity

Activity_category_statistics

Toxicity and safety peptides

Database_Source

Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 121-aa standard natural toxicity peptide sequence curated from Peptipedia, with an available 3D structural model.

Sequence

SLLEFGKMILEETGKLAIPSYSSYGCYCGWGGKGTPKDATDRCCFVHDCCYGNLPDCNPKSDRYKYKRVNGAIVCEKGTSCENRICECDKAAAICFRQNLNTYSKKYMLYPDFLCKGELKC

FASTA

>TPDB38134|Toxicity|length=121
SLLEFGKMILEETGKLAIPSYSSYGCYCGWGGKGTPKDATDRCCFVHDCCYGNLPDCNPKSDRYKYKRVNGAIVCEKGTSCENRICECDKAAAICFRQNLNTYSKKYMLYPDFLCKGELKC

Formula C591H917N159O178S16

Absent Amino Acids

Common Amino Acids C

Mass 13610.70

PI 7.92

Basic Residues 19

Acidic Residues 14

Hydrophobic Residues 39

Net Charge +3

Boman Index 21.65

Hydrophobicity -0.445

Aliphatic Index 57.27

Half Life

Mammalian: 1.9 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 19785

Absorbance 280nm 145.36

Polar Residues 42

number

6

A

5

R

6

N

7

D

14

C

7

E

1

Q

11

G

1

H

5

I

9

L

13

K

2

M

4

F

5

P

7

S

5

T

1

W

9

Y

3

V

Amino Acid Distribution

A: 6 R: 5 N: 6 D: 7 C: 14 E: 7 Q: 1 G: 11 H: 1 I: 5 L: 9 K: 13 M: 2 F: 4 P: 5 S: 7 T: 5 W: 1 Y: 9 V: 3

Length

121

Formula

C591H917N159O178S16

Mass

13610.70

PI

7.92

Net Charge

+3

Boman Index

21.65

Hydrophobicity

-0.445

Evidence 1 Activity

Source & Reference

Database Source NA