TPDB

3D PDB MODEL

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TPDB ID TPDB37906

Activity

Toxicity

Activity_category_statistics

Toxicity and safety peptides

Database_Source

Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 47-aa standard natural toxicity peptide sequence curated from Peptipedia, with an available 3D structural model.

Sequence

SCDSEFSSEFCERPEESCSCLTHSCCHWSRRDQCMTPQRCISAQKGN

FASTA

>TPDB37906|Toxicity|length=47
SCDSEFSSEFCERPEESCSCLTHSCCHWSRRDQCMTPQRCISAQKGN

Formula C214H331N69O77S9

Absent Amino Acids YV

Common Amino Acids S

Mass 5390.94

PI 5.39

Basic Residues 7

Acidic Residues 7

Hydrophobic Residues 7

Net Charge -2

Boman Index 15.93

Hydrophobicity -0.900

Aliphatic Index 18.72

Half Life

Mammalian: 1.9 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 6000

Absorbance 280nm 111.30

Polar Residues 23

number

1

A

4

R

1

N

2

D

8

C

5

E

3

Q

1

G

2

H

1

I

1

L

1

K

1

M

2

F

2

P

9

S

2

T

1

W

0

Y

0

V

Amino Acid Distribution

A: 1 R: 4 N: 1 D: 2 C: 8 E: 5 Q: 3 G: 1 H: 2 I: 1 L: 1 K: 1 M: 1 F: 2 P: 2 S: 9 T: 2 W: 1 Y: 0 V: 0

Length

47

Formula

C214H331N69O77S9

Mass

5390.94

PI

5.39

Net Charge

-2

Boman Index

15.93

Hydrophobicity

-0.900

Evidence 1 Activity

Source & Reference

Database Source NA