TPDB

3D PDB MODEL

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TPDB ID TPDB37697

Activity

Toxicity

Activity_category_statistics

Toxicity and safety peptides

Database_Source

Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 125-aa standard natural toxicity peptide sequence curated from Peptipedia, with an available 3D structural model.

Sequence

RLVYNQAKAESNSHHAPLSDGKTGSSYPHWFTNGYDGDGKLIKGRMPIKFGKADCDRPPKHGKDGMGKDDHYLLEFPTFPDGHDYKFDSKKPKEDPGPARVIYTYPNKVFCGIVAHERGNQGDLR

FASTA

>TPDB37697|Toxicity|length=125
RLVYNQAKAESNSHHAPLSDGKTGSSYPHWFTNGYDGDGKLIKGRMPIKFGKADCDRPPKHGKDGMGKDDHYLLEFPTFPDGHDYKFDSKKPKEDPGPARVIYTYPNKVFCGIVAHERGNQGDLR

Formula C625H941N179O184S4

Absent Amino Acids

Common Amino Acids G

Mass 14034.68

PI 9.06

Basic Residues 27

Acidic Residues 17

Hydrophobic Residues 36

Net Charge +4

Boman Index 37.72

Hydrophobicity -1.082

Aliphatic Index 45.28

Half Life

Mammalian: 1 hour Yeast: 2 min E.coli: 2 min

Extinction Coefficient Cystines 16055

Absorbance 280nm 114.40

Polar Residues 26

number

6

A

6

R

5

N

13

D

2

C

4

E

2

Q

15

G

7

H

4

I

6

L

14

K

2

M

6

F

11

P

6

S

4

T

1

W

7

Y

4

V

Amino Acid Distribution

A: 6 R: 6 N: 5 D: 13 C: 2 E: 4 Q: 2 G: 15 H: 7 I: 4 L: 6 K: 14 M: 2 F: 6 P: 11 S: 6 T: 4 W: 1 Y: 7 V: 4

Length

125

Formula

C625H941N179O184S4

Mass

14034.68

PI

9.06

Net Charge

+4

Boman Index

37.72

Hydrophobicity

-1.082

Evidence 1 Activity

Source & Reference

Database Source NA