TPDB

3D PDB MODEL

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TPDB ID TPDB35611

Activity

Toxicity

Activity_category_statistics

Toxicity and safety peptides

Database_Source

Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 133-aa standard natural toxicity peptide sequence curated from Peptipedia, with an available 3D structural model.

Sequence

MSWQTYVDDHLMCDIEGTGQHLTAAAILGLDGTVWAKSDKFPEFKPEEMKGIINEFNEVGTLAPTGLFLGGAKYMVLQGEAGAVIRGKKGAGGICIKKTGQAMVMGIYDEPVAPGQCNMIVERLGDYLVDQNM

FASTA

>TPDB35611|Toxicity|length=133
MSWQTYVDDHLMCDIEGTGQHLTAAAILGLDGTVWAKSDKFPEFKPEEMKGIINEFNEVGTLAPTGLFLGGAKYMVLQGEAGAVIRGKKGAGGICIKKTGQAMVMGIYDEPVAPGQCNMIVERLGDYLVDQNM

Formula C633H998N164O191S11

Absent Amino Acids

Common Amino Acids G

Mass 14314.53

PI 4.59

Basic Residues 13

Acidic Residues 17

Hydrophobic Residues 57

Net Charge -6

Boman Index 25.14

Hydrophobicity -0.031

Aliphatic Index 83.61

Half Life

Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 17085

Absorbance 280nm 119.35

Polar Residues 26

number

11

A

2

R

4

N

8

D

3

C

9

E

6

Q

19

G

2

H

9

I

10

L

9

K

8

M

4

F

5

P

2

S

7

T

2

W

4

Y

9

V

Amino Acid Distribution

A: 11 R: 2 N: 4 D: 8 C: 3 E: 9 Q: 6 G: 19 H: 2 I: 9 L: 10 K: 9 M: 8 F: 4 P: 5 S: 2 T: 7 W: 2 Y: 4 V: 9

Length

133

Formula

C633H998N164O191S11

Mass

14314.53

PI

4.59

Net Charge

-6

Boman Index

25.14

Hydrophobicity

-0.031

Evidence 1 Activity

Source & Reference

Database Source NA