TPDB

3D PDB MODEL

Drag to rotate. Click a residue or atom to inspect it; the selected residue is highlighted in amber.

TPDB ID TPDB35458

Activity

Toxicity

Activity_category_statistics

Toxicity and safety peptides

Database_Source

Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 65-aa standard natural toxicity peptide sequence curated from Peptipedia, with an available 3D structural model.

Sequence

MSGLGTMVLTLLLLVLMTTSHQDAGEKQAMQRDAKNFSRRRLVIRRPKQGSAKCSVSRRRNTAAA

FASTA

>TPDB35458|Toxicity|length=65
MSGLGTMVLTLLLLVLMTTSHQDAGEKQAMQRDAKNFSRRRLVIRRPKQGSAKCSVSRRRNTAAA

Formula C303H530N104O89S5

Absent Amino Acids WY

Common Amino Acids R

Mass 7214.48

PI 12.32

Basic Residues 14

Acidic Residues 3

Hydrophobic Residues 25

Net Charge +10

Boman Index 13.83

Hydrophobicity -0.386

Aliphatic Index 82.62

Half Life

Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 0

Absorbance 280nm 0.00

Polar Residues 18

number

7

A

9

R

2

N

2

D

1

C

1

E

4

Q

4

G

1

H

1

I

8

L

4

K

4

M

1

F

1

P

6

S

5

T

0

W

0

Y

4

V

Amino Acid Distribution

A: 7 R: 9 N: 2 D: 2 C: 1 E: 1 Q: 4 G: 4 H: 1 I: 1 L: 8 K: 4 M: 4 F: 1 P: 1 S: 6 T: 5 W: 0 Y: 0 V: 4

Length

65

Formula

C303H530N104O89S5

Mass

7214.48

PI

12.32

Net Charge

+10

Boman Index

13.83

Hydrophobicity

-0.386

Evidence 1 Activity

Source & Reference

Database Source NA