TPDB

3D PDB MODEL

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TPDB ID TPDB35429

Activity

Toxicity

Activity_category_statistics

Toxicity and safety peptides

Database_Source

Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 110-aa standard natural toxicity peptide sequence curated from Peptipedia, with an available 3D structural model.

Sequence

MSHNVEKITDAKVFKEKVQEGSGPVIVDCSATWCGPCKAISPVFQRLSTSEEFKNAKFYEIDVDELSEVAAELGVRAMPTFMFFKDGQKVNEVVGANPPALEAAIKAHVA

FASTA

>TPDB35429|Toxicity|length=110
MSHNVEKITDAKVFKEKVQEGSGPVIVDCSATWCGPCKAISPVFQRLSTSEEFKNAKFYEIDVDELSEVAAELGVRAMPTFMFFKDGQKVNEVVGANPPALEAAIKAHVA

Formula C534H838N138O162S6

Absent Amino Acids

Common Amino Acids AV

Mass 11975.72

PI 4.96

Basic Residues 14

Acidic Residues 16

Hydrophobic Residues 47

Net Charge -4

Boman Index 32.26

Hydrophobicity -0.082

Aliphatic Index 78.00

Half Life

Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 7115

Absorbance 280nm 59.41

Polar Residues 22

number

13

A

2

R

4

N

5

D

3

C

11

E

3

Q

6

G

2

H

5

I

4

L

10

K

3

M

7

F

6

P

7

S

4

T

1

W

1

Y

13

V

Amino Acid Distribution

A: 13 R: 2 N: 4 D: 5 C: 3 E: 11 Q: 3 G: 6 H: 2 I: 5 L: 4 K: 10 M: 3 F: 7 P: 6 S: 7 T: 4 W: 1 Y: 1 V: 13

Length

110

Formula

C534H838N138O162S6

Mass

11975.72

PI

4.96

Net Charge

-4

Boman Index

32.26

Hydrophobicity

-0.082

Evidence 1 Activity

Source & Reference

Database Source NA