TPDB

3D PDB MODEL

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TPDB ID TPDB35420

Activity

Toxicity

Activity_category_statistics

Toxicity and safety peptides

Database_Source

Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 60-aa standard natural toxicity peptide sequence curated from Peptipedia, with an available 3D structural model.

Sequence

MSDDERDYHFSKRGIPCACDSDGPDIRSASLSGIVWMGSCPSGWKKCKSYYSIVADCCNQ

FASTA

>TPDB35420|Toxicity|length=60
MSDDERDYHFSKRGIPCACDSDGPDIRSASLSGIVWMGSCPSGWKKCKSYYSIVADCCNQ

Formula C280H427N79O92S8

Absent Amino Acids T

Common Amino Acids S

Mass 6628.42

PI 5.46

Basic Residues 8

Acidic Residues 8

Hydrophobic Residues 18

Net Charge -1

Boman Index 9.96

Hydrophobicity -0.510

Aliphatic Index 47.17

Half Life

Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 15845

Absorbance 280nm 239.05

Polar Residues 21

number

3

A

3

R

1

N

7

D

6

C

1

E

1

Q

5

G

1

H

4

I

1

L

4

K

2

M

1

F

3

P

10

S

0

T

2

W

3

Y

2

V

Amino Acid Distribution

A: 3 R: 3 N: 1 D: 7 C: 6 E: 1 Q: 1 G: 5 H: 1 I: 4 L: 1 K: 4 M: 2 F: 1 P: 3 S: 10 T: 0 W: 2 Y: 3 V: 2

Length

60

Formula

C280H427N79O92S8

Mass

6628.42

PI

5.46

Net Charge

-1

Boman Index

9.96

Hydrophobicity

-0.510

Evidence 1 Activity

Source & Reference

Database Source NA