TPDB

3D PDB MODEL

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TPDB ID TPDB35241

Activity

Toxicity

Activity_category_statistics

Toxicity and safety peptides

Database_Source

Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 93-aa standard natural toxicity peptide sequence curated from Peptipedia, with an available 3D structural model.

Sequence

MPKLEMMLLVLLIFPLSYFIAAGGQVVQVDRRGDGLAGYLQRGDRDVQDCQVSTPGSKWGRCCLNRVCGPMCCPASHCYCVYQSGKGPTGCSC

FASTA

>TPDB35241|Toxicity|length=93
MPKLEMMLLVLLIFPLSYFIAAGGQVVQVDRRGDGLAGYLQRGDRDVQDCQVSTPGSKWGRCCLNRVCGPMCCPASHCYCVYQSGKGPTGCSC

Formula C432H688N124O125S14

Absent Amino Acids

Common Amino Acids G

Mass 10067.81

PI 7.95

Basic Residues 10

Acidic Residues 6

Hydrophobic Residues 34

Net Charge +3

Boman Index 7.77

Hydrophobicity 0.087

Aliphatic Index 75.38

Half Life

Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 12085

Absorbance 280nm 120.04

Polar Residues 29

number

4

A

6

R

1

N

5

D

10

C

1

E

6

Q

12

G

1

H

2

I

9

L

3

K

4

M

2

F

6

P

6

S

2

T

1

W

4

Y

8

V

Amino Acid Distribution

A: 4 R: 6 N: 1 D: 5 C: 10 E: 1 Q: 6 G: 12 H: 1 I: 2 L: 9 K: 3 M: 4 F: 2 P: 6 S: 6 T: 2 W: 1 Y: 4 V: 8

Length

93

Formula

C432H688N124O125S14

Mass

10067.81

PI

7.95

Net Charge

+3

Boman Index

7.77

Hydrophobicity

0.087

Evidence 1 Activity

Source & Reference

Database Source NA