TPDB

3D PDB MODEL

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TPDB ID TPDB35211

Activity

Toxicity

Activity_category_statistics

Toxicity and safety peptides

Database_Source

Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 95-aa standard natural toxicity peptide sequence curated from Peptipedia, with an available 3D structural model.

Sequence

MPKLAVVLLVLLILPLSYFDVAGGQAEQGDWRGNRLARDLQRGGRDDESECIINTRDSPWGSAAGLGCAVACAVLETVAPASIIGEGASGCSCPG

FASTA

>TPDB35211|Toxicity|length=95
MPKLAVVLLVLLILPLSYFDVAGGQAEQGDWRGNRLARDLQRGGRDDESECIINTRDSPWGSAAGLGCAVACAVLETVAPASIIGEGASGCSCPG

Formula C421H681N121O133S6

Absent Amino Acids H

Common Amino Acids G

Mass 9758.13

PI 4.29

Basic Residues 7

Acidic Residues 11

Hydrophobic Residues 40

Net Charge -4

Boman Index 13.02

Hydrophobicity 0.235

Aliphatic Index 99.68

Half Life

Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 12740

Absorbance 280nm 130.56

Polar Residues 20

number

12

A

6

R

2

N

6

D

5

C

5

E

3

Q

13

G

0

H

5

I

11

L

1

K

1

M

1

F

5

P

7

S

2

T

2

W

1

Y

7

V

Amino Acid Distribution

A: 12 R: 6 N: 2 D: 6 C: 5 E: 5 Q: 3 G: 13 H: 0 I: 5 L: 11 K: 1 M: 1 F: 1 P: 5 S: 7 T: 2 W: 2 Y: 1 V: 7

Length

95

Formula

C421H681N121O133S6

Mass

9758.13

PI

4.29

Net Charge

-4

Boman Index

13.02

Hydrophobicity

0.235

Evidence 1 Activity

Source & Reference

Database Source NA