TPDB

3D PDB MODEL

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TPDB ID TPDB35145

Activity

Toxicity

Activity_category_statistics

Toxicity and safety peptides

Database_Source

Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 108-aa standard natural toxicity peptide sequence curated from Peptipedia, with an available 3D structural model.

Sequence

MPFKGLQDADVAKALEGCKDAGTFDHKKFFHACGLSGKSGADVKDAFFVIDQDKSGFIEEEELKLFLQNFKAGARALTDEETKKFLKAGDSDGDGKIGADEFAEMVKV

FASTA

>TPDB35145|Toxicity|length=108
MPFKGLQDADVAKALEGCKDAGTFDHKKFFHACGLSGKSGADVKDAFFVIDQDKSGFIEEEELKLFLQNFKAGARALTDEETKKFLKAGDSDGDGKIGADEFAEMVKV

Formula C522H808N134O164S4

Absent Amino Acids WY

Common Amino Acids K

Mass 11713.20

PI 4.69

Basic Residues 18

Acidic Residues 22

Hydrophobic Residues 42

Net Charge -6

Boman Index 34.78

Hydrophobicity -0.409

Aliphatic Index 65.19

Half Life

Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 125

Absorbance 280nm 1.07

Polar Residues 13

number

13

A

1

R

1

N

13

D

2

C

9

E

3

Q

12

G

2

H

3

I

8

L

15

K

2

M

11

F

1

P

4

S

3

T

0

W

0

Y

5

V

Amino Acid Distribution

A: 13 R: 1 N: 1 D: 13 C: 2 E: 9 Q: 3 G: 12 H: 2 I: 3 L: 8 K: 15 M: 2 F: 11 P: 1 S: 4 T: 3 W: 0 Y: 0 V: 5

Length

108

Formula

C522H808N134O164S4

Mass

11713.20

PI

4.69

Net Charge

-6

Boman Index

34.78

Hydrophobicity

-0.409

Evidence 1 Activity

Source & Reference

Database Source NA