TPDB

3D PDB MODEL

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TPDB ID TPDB34338

Activity

Toxicity

Activity_category_statistics

Toxicity and safety peptides

Database_Source

Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 88-aa standard natural toxicity peptide sequence curated from Peptipedia, with an available 3D structural model.

Sequence

MKLGFATFLLVCLLLSSSVFEVTMAGSSFCDSKCGVRCSKAGYQERCLKYCGICCEKCHCVPSGTYGNKDECPCYRDLKNSKGNPKCP

FASTA

>TPDB34338|Toxicity|length=88
MKLGFATFLLVCLLLSSSVFEVTMAGSSFCDSKCGVRCSKAGYQERCLKYCGICCEKCHCVPSGTYGNKDECPCYRDLKNSKGNPKCP

Formula C411H654N112O123S15

Absent Amino Acids W

Common Amino Acids C

Mass 9613.29

PI 8.11

Basic Residues 13

Acidic Residues 7

Hydrophobic Residues 27

Net Charge +5

Boman Index 12.57

Hydrophobicity -0.064

Aliphatic Index 59.77

Half Life

Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 6710

Absorbance 280nm 69.80

Polar Residues 33

number

3

A

3

R

3

N

3

D

13

C

4

E

1

Q

8

G

1

H

1

I

8

L

9

K

2

M

4

F

4

P

9

S

3

T

0

W

4

Y

5

V

Amino Acid Distribution

A: 3 R: 3 N: 3 D: 3 C: 13 E: 4 Q: 1 G: 8 H: 1 I: 1 L: 8 K: 9 M: 2 F: 4 P: 4 S: 9 T: 3 W: 0 Y: 4 V: 5

Length

88

Formula

C411H654N112O123S15

Mass

9613.29

PI

8.11

Net Charge

+5

Boman Index

12.57

Hydrophobicity

-0.064

Evidence 1 Activity

Source & Reference

Database Source NA