TPDB

3D PDB MODEL

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TPDB ID TPDB34092

Activity

Toxicity

Activity_category_statistics

Toxicity and safety peptides

Database_Source

Peptipedia

Sequence_Type

modified_plain

Has_Modification Yes

Description A 54-aa modified toxicity peptide sequence curated from Peptipedia, with an available 3D structural model.

Modification

Modified, details unspecified

Sequence

MIAAVPXXEGLQLSEDERGGCLPHNRFCNALSGPRCCSGLKCKELSIWDSICLG

FASTA

>TPDB34092|Toxicity|length=54
MIAAVPXXEGLQLSEDERGGCLPHNRFCNALSGPRCCSGLKCKELSIWDSICLG

Formula C236H383N69O73S7

Absent Amino Acids TY

Common Amino Acids L

Mass 5579.48

PI 5.51

Basic Residues 6

Acidic Residues 6

Hydrophobic Residues 17

Net Charge -1

Boman Index 9.45

Hydrophobicity 0.024

Aliphatic Index 83.15

Half Life

Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 5875

Absorbance 280nm 105.30

Polar Residues 14

number

3

A

3

R

2

N

2

D

6

C

4

E

1

Q

6

G

1

H

3

I

7

L

2

K

1

M

1

F

3

P

5

S

0

T

1

W

0

Y

1

V

Amino Acid Distribution

A: 3 R: 3 N: 2 D: 2 C: 6 E: 4 Q: 1 G: 6 H: 1 I: 3 L: 7 K: 2 M: 1 F: 1 P: 3 S: 5 T: 0 W: 1 Y: 0 V: 1

Length

54

Formula

C236H383N69O73S7

Mass

5579.48

PI

5.51

Net Charge

-1

Boman Index

9.45

Hydrophobicity

0.024

Evidence 1 Activity

Source & Reference

Database Source NA