TPDB

3D PDB MODEL

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TPDB ID TPDB33977

Activity

Toxicity

Activity_category_statistics

Toxicity and safety peptides

Database_Source

Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 120-aa standard natural toxicity peptide sequence curated from Peptipedia, with an available 3D structural model.

Sequence

MGVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPEGFPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISNN

FASTA

>TPDB33977|Toxicity|length=120
MGVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPEGFPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISNN

Formula C592H920N148O182S1

Absent Amino Acids CW

Common Amino Acids I

Mass 13054.76

PI 4.73

Basic Residues 13

Acidic Residues 16

Hydrophobic Residues 46

Net Charge -4

Boman Index 29.12

Hydrophobicity -0.216

Aliphatic Index 85.25

Half Life

Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 5960

Absorbance 280nm 45.65

Polar Residues 29

number

6

A

2

R

9

N

7

D

0

C

9

E

1

Q

12

G

1

H

13

I

5

L

10

K

1

M

8

F

8

P

8

S

7

T

0

W

4

Y

9

V

Amino Acid Distribution

A: 6 R: 2 N: 9 D: 7 C: 0 E: 9 Q: 1 G: 12 H: 1 I: 13 L: 5 K: 10 M: 1 F: 8 P: 8 S: 8 T: 7 W: 0 Y: 4 V: 9

Length

120

Formula

C592H920N148O182S1

Mass

13054.76

PI

4.73

Net Charge

-4

Boman Index

29.12

Hydrophobicity

-0.216

Evidence 1 Activity

Source & Reference

Database Source NA