TPDB

3D PDB MODEL

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TPDB ID TPDB33526

Activity

Toxicity

Activity_category_statistics

Toxicity and safety peptides

Database_Source

Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 58-aa standard natural toxicity peptide sequence curated from Peptipedia, with an available 3D structural model.

Sequence

LTCYMNPSGTMVCKEHETMCYQLIVWTFQYRVLYLKGCTSSCPEGNNRACCSTGLCNN

FASTA

>TPDB33526|Toxicity|length=58
LTCYMNPSGTMVCKEHETMCYQLIVWTFQYRVLYLKGCTSSCPEGNNRACCSTGLCNN

Formula C278H432N76O86S11

Absent Amino Acids D

Common Amino Acids C

Mass 6567.61

PI 7.49

Basic Residues 5

Acidic Residues 3

Hydrophobic Residues 19

Net Charge +1

Boman Index 3.76

Hydrophobicity -0.119

Aliphatic Index 57.07

Half Life

Mammalian: 5.5 hour Yeast: 3 min E.coli: 2 min

Extinction Coefficient Cystines 11960

Absorbance 280nm 182.11

Polar Residues 29

number

1

A

2

R

5

N

0

D

8

C

3

E

2

Q

4

G

1

H

1

I

5

L

2

K

3

M

1

F

2

P

4

S

6

T

1

W

4

Y

3

V

Amino Acid Distribution

A: 1 R: 2 N: 5 D: 0 C: 8 E: 3 Q: 2 G: 4 H: 1 I: 1 L: 5 K: 2 M: 3 F: 1 P: 2 S: 4 T: 6 W: 1 Y: 4 V: 3

Length

58

Formula

C278H432N76O86S11

Mass

6567.61

PI

7.49

Net Charge

+1

Boman Index

3.76

Hydrophobicity

-0.119

Evidence 1 Activity

Source & Reference

Database Source NA