TPDB

3D PDB MODEL

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TPDB ID TPDB33224

Activity

Toxicity

Activity_category_statistics

Toxicity and safety peptides

Database_Source

Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 73-aa standard natural toxicity peptide sequence curated from Peptipedia, with an available 3D structural model.

Sequence

LICYMGPKTPRTCPRGQNLCYTKTWCDAFCSSRGKVVELGCAATCPIAKSYEDVTCCSTDNCNPFPVRPRPHP

FASTA

>TPDB33224|Toxicity|length=73
LICYMGPKTPRTCPRGQNLCYTKTWCDAFCSSRGKVVELGCAATCPIAKSYEDVTCCSTDNCNPFPVRPRPHP

Formula C345H541N99O102S11

Absent Amino Acids

Common Amino Acids C

Mass 8060.35

PI 8.14

Basic Residues 10

Acidic Residues 5

Hydrophobic Residues 20

Net Charge +4

Boman Index 11.87

Hydrophobicity -0.340

Aliphatic Index 48.08

Half Life

Mammalian: 5.5 hour Yeast: 3 min E.coli: 2 min

Extinction Coefficient Cystines 10595

Absorbance 280nm 131.45

Polar Residues 28

number

4

A

5

R

3

N

3

D

10

C

2

E

1

Q

4

G

1

H

2

I

3

L

4

K

1

M

2

F

9

P

4

S

7

T

1

W

3

Y

4

V

Amino Acid Distribution

A: 4 R: 5 N: 3 D: 3 C: 10 E: 2 Q: 1 G: 4 H: 1 I: 2 L: 3 K: 4 M: 1 F: 2 P: 9 S: 4 T: 7 W: 1 Y: 3 V: 4

Length

73

Formula

C345H541N99O102S11

Mass

8060.35

PI

8.14

Net Charge

+4

Boman Index

11.87

Hydrophobicity

-0.340

Evidence 1 Activity

Source & Reference

Database Source NA