TPDB

3D PDB MODEL

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TPDB ID TPDB32894

Activity

Toxicity

Activity_category_statistics

Toxicity and safety peptides

Database_Source

Peptipedia

Sequence_Type

modified_plain

Has_Modification Yes

Description A 50-aa modified toxicity peptide sequence curated from Peptipedia, with an available 3D structural model.

Modification

Modified, details unspecified

Sequence

KPCCMNVIAPCDVATCPNYPTAPCWNVPCQCRAVFRSRGRFLTPSECNGZ

FASTA

>TPDB32894|Toxicity|length=50
KPCCMNVIAPCDVATCPNYPTAPCWNVPCQCRAVFRSRGRFLTPSECNGZ

Formula C228H356N68O65S9

Absent Amino Acids H

Common Amino Acids C

Mass 5378.29

PI 8.10

Basic Residues 5

Acidic Residues 2

Hydrophobic Residues 15

Net Charge +3

Boman Index 5.12

Hydrophobicity -0.090

Aliphatic Index 46.80

Half Life

Mammalian: 1.3 hour Yeast: 3 min E.coli: 2 min

Extinction Coefficient Cystines 7490

Absorbance 280nm 139.26

Polar Residues 19

number

4

A

4

R

4

N

1

D

8

C

1

E

1

Q

2

G

0

H

1

I

1

L

1

K

1

M

2

F

7

P

2

S

3

T

1

W

1

Y

4

V

Amino Acid Distribution

A: 4 R: 4 N: 4 D: 1 C: 8 E: 1 Q: 1 G: 2 H: 0 I: 1 L: 1 K: 1 M: 1 F: 2 P: 7 S: 2 T: 3 W: 1 Y: 1 V: 4

Length

50

Formula

C228H356N68O65S9

Mass

5378.29

PI

8.10

Net Charge

+3

Boman Index

5.12

Hydrophobicity

-0.090

Evidence 1 Activity

Source & Reference

Database Source NA