TPDB

3D PDB MODEL

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TPDB ID TPDB32380

Activity

Toxicity

Activity_category_statistics

Toxicity and safety peptides

Database_Source

Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 71-aa standard natural toxicity peptide sequence curated from Peptipedia, with an available 3D structural model.

Sequence

IRCFITPDITSKDCPNGHVCYTKTWCDGFCSSRGKRVDLGCAATCPTVRTGVDIQCCSTDDCDPFPTRKRP

FASTA

>TPDB32380|Toxicity|length=71
IRCFITPDITSKDCPNGHVCYTKTWCDGFCSSRGKRVDLGCAATCPTVRTGVDIQCCSTDDCDPFPTRKRP

Formula C328H520N98O104S10

Absent Amino Acids EM

Common Amino Acids C

Mass 7820.93

PI 7.73

Basic Residues 11

Acidic Residues 8

Hydrophobic Residues 16

Net Charge +2

Boman Index 14.71

Hydrophobicity -0.401

Aliphatic Index 46.62

Half Life

Mammalian: 20 hour Yeast: 30 min E.coli: >10 hour

Extinction Coefficient Cystines 7615

Absorbance 280nm 97.37

Polar Residues 26

number

2

A

6

R

1

N

8

D

10

C

0

E

1

Q

5

G

1

H

4

I

1

L

4

K

0

M

3

F

6

P

4

S

9

T

1

W

1

Y

4

V

Amino Acid Distribution

A: 2 R: 6 N: 1 D: 8 C: 10 E: 0 Q: 1 G: 5 H: 1 I: 4 L: 1 K: 4 M: 0 F: 3 P: 6 S: 4 T: 9 W: 1 Y: 1 V: 4

Length

71

Formula

C328H520N98O104S10

Mass

7820.93

PI

7.73

Net Charge

+2

Boman Index

14.71

Hydrophobicity

-0.401

Evidence 1 Activity

Source & Reference

Database Source NA