TPDB

3D PDB MODEL

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TPDB ID TPDB32309

Activity

Toxicity

Activity_category_statistics

Toxicity and safety peptides

Database_Source

Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 134-aa standard natural toxicity peptide sequence curated from Peptipedia, with an available 3D structural model.

Sequence

IIYPGTLWCGHGNVSSGPNELGRFKHTDACCRTHDMCPDVMSAGESKHGLTNTASHTRLSCDCDDTFYDCLKNSGDKISSYFVGKMYFNLIDTKCYKLEHPVTGCGERTEGRCLRYTVDKSKPKAYQWFDLRKY

FASTA

>TPDB32309|Toxicity|length=134
IIYPGTLWCGHGNVSSGPNELGRFKHTDACCRTHDMCPDVMSAGESKHGLTNTASHTRLSCDCDDTFYDCLKNSGDKISSYFVGKMYFNLIDTKCYKLEHPVTGCGERTEGRCLRYTVDKSKPKAYQWFDLRKY

Formula C660H1008N186O202S13

Absent Amino Acids

Common Amino Acids G

Mass 15197.17

PI 7.74

Basic Residues 24

Acidic Residues 16

Hydrophobic Residues 40

Net Charge +2

Boman Index 27.27

Hydrophobicity -0.643

Aliphatic Index 51.64

Half Life

Mammalian: 20 hour Yeast: 30 min E.coli: >10 hour

Extinction Coefficient Cystines 23545

Absorbance 280nm 154.93

Polar Residues 45

number

4

A

7

R

5

N

11

D

10

C

5

E

1

Q

12

G

6

H

4

I

9

L

11

K

3

M

5

F

5

P

10

S

11

T

2

W

8

Y

5

V

Amino Acid Distribution

A: 4 R: 7 N: 5 D: 11 C: 10 E: 5 Q: 1 G: 12 H: 6 I: 4 L: 9 K: 11 M: 3 F: 5 P: 5 S: 10 T: 11 W: 2 Y: 8 V: 5

Length

134

Formula

C660H1008N186O202S13

Mass

15197.17

PI

7.74

Net Charge

+2

Boman Index

27.27

Hydrophobicity

-0.643

Evidence 1 Activity

Source & Reference

Database Source NA