TPDB

3D PDB MODEL

Drag to rotate. Click a residue or atom to inspect it; the selected residue is highlighted in amber.

TPDB ID TPDB32126

Activity

Toxicity

Activity_category_statistics

Toxicity and safety peptides

Database_Source

Peptipedia ToxinPred 3.0

Sequence_Type

standard

Has_Modification No

Description A 35-aa standard natural toxicity peptide sequence curated from Peptipedia and ToxinPred 3.0, with an available 3D structural model.

Sequence

HAEHMQDDNSAAQNPWVIAIRQCCTSCNFGCQPCC

FASTA

>TPDB32126|Toxicity|length=35
HAEHMQDDNSAAQNPWVIAIRQCCTSCNFGCQPCC

Formula C157H238N50O52S7

Absent Amino Acids LKY

Common Amino Acids C

Mass 3882.34

PI 5.11

Basic Residues 3

Acidic Residues 3

Hydrophobic Residues 10

Net Charge -2

Boman Index 6.22

Hydrophobicity -0.360

Aliphatic Index 42.00

Half Life

Mammalian: 3.5 hour Yeast: 10 min E.coli: >10 hour

Extinction Coefficient Cystines 5875

Absorbance 280nm 151.33

Polar Residues 16

number

4

A

1

R

3

N

2

D

6

C

1

E

4

Q

1

G

2

H

2

I

0

L

0

K

1

M

1

F

2

P

2

S

1

T

1

W

0

Y

1

V

Amino Acid Distribution

A: 4 R: 1 N: 3 D: 2 C: 6 E: 1 Q: 4 G: 1 H: 2 I: 2 L: 0 K: 0 M: 1 F: 1 P: 2 S: 2 T: 1 W: 1 Y: 0 V: 1

Length

35

Formula

C157H238N50O52S7

Mass

3882.34

PI

5.11

Net Charge

-2

Boman Index

6.22

Hydrophobicity

-0.360

Evidence 1 Activity

Source & Reference

Database Source NA