TPDB

3D PDB MODEL

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TPDB ID TPDB32012

Activity

Toxicity

Activity_category_statistics

Toxicity and safety peptides

Database_Source

Peptipedia

Sequence_Type

modified_plain

Has_Modification Yes

Description A 51-aa modified toxicity peptide sequence curated from Peptipedia, with an available 3D structural model.

Modification

Modified, details unspecified

Sequence

GVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAITSVENIYERYGXG

FASTA

>TPDB32012|Toxicity|length=51
GVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAITSVENIYERYGXG

Formula C254H386N62O76

Absent Amino Acids CHMW

Common Amino Acids A

Mass 5524.23

PI 4.44

Basic Residues 4

Acidic Residues 6

Hydrophobic Residues 23

Net Charge -2

Boman Index 7.36

Hydrophobicity -0.002

Aliphatic Index 86.08

Half Life

Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 4470

Absorbance 280nm 80.92

Polar Residues 13

number

5

A

2

R

3

N

2

D

0

C

4

E

1

Q

4

G

0

H

4

I

3

L

2

K

0

M

4

F

3

P

2

S

4

T

0

W

3

Y

4

V

Amino Acid Distribution

A: 5 R: 2 N: 3 D: 2 C: 0 E: 4 Q: 1 G: 4 H: 0 I: 4 L: 3 K: 2 M: 0 F: 4 P: 3 S: 2 T: 4 W: 0 Y: 3 V: 4

Length

51

Formula

C254H386N62O76

Mass

5524.23

PI

4.44

Net Charge

-2

Boman Index

7.36

Hydrophobicity

-0.002

Evidence 1 Activity

Source & Reference

Database Source NA