TPDB

3D PDB MODEL

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TPDB ID TPDB32010

Activity

Toxicity

Activity_category_statistics

Toxicity and safety peptides

Database_Source

Peptipedia

Sequence_Type

modified_plain

Has_Modification Yes

Description A 51-aa modified toxicity peptide sequence curated from Peptipedia, with an available 3D structural model.

Modification

Modified, details unspecified

Sequence

GVFNYEAETTSVIPAAWLWKXFILDGDNLFPKVAPQAXTSVENIYERGGWG

FASTA

>TPDB32010|Toxicity|length=51
GVFNYEAETTSVIPAAWLWKXFILDGDNLFPKVAPQAXTSVENIYERGGWG

Formula C255H371N61O73

Absent Amino Acids CHM

Common Amino Acids AG

Mass 5459.12

PI 4.13

Basic Residues 3

Acidic Residues 6

Hydrophobic Residues 23

Net Charge -3

Boman Index 3.25

Hydrophobicity -0.078

Aliphatic Index 78.43

Half Life

Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 19480

Absorbance 280nm 356.83

Polar Residues 11

number

5

A

1

R

3

N

2

D

0

C

4

E

1

Q

5

G

0

H

3

I

3

L

2

K

0

M

3

F

3

P

2

S

3

T

3

W

2

Y

4

V

Amino Acid Distribution

A: 5 R: 1 N: 3 D: 2 C: 0 E: 4 Q: 1 G: 5 H: 0 I: 3 L: 3 K: 2 M: 0 F: 3 P: 3 S: 2 T: 3 W: 3 Y: 2 V: 4

Length

51

Formula

C255H371N61O73

Mass

5459.12

PI

4.13

Net Charge

-3

Boman Index

3.25

Hydrophobicity

-0.078

Evidence 1 Activity

Source & Reference

Database Source NA