TPDB

3D PDB MODEL

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TPDB ID TPDB31912

Activity

Toxicity

Activity_category_statistics

Toxicity and safety peptides

Database_Source

Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 64-aa standard natural toxicity peptide sequence curated from Peptipedia, with an available 3D structural model.

Sequence

GRDAYIAKNYNCVYHCFRDDYCNGLCTENGADSGYCYLAGKYGNACWCINLPDDKPIRIPGKCH

FASTA

>TPDB31912|Toxicity|length=64
GRDAYIAKNYNCVYHCFRDDYCNGLCTENGADSGYCYLAGKYGNACWCINLPDDKPIRIPGKCH

Formula C312H460N88O94S8

Absent Amino Acids QM

Common Amino Acids C

Mass 7204.10

PI 6.84

Basic Residues 9

Acidic Residues 7

Hydrophobic Residues 22

Net Charge -0

Boman Index 6.74

Hydrophobicity -0.542

Aliphatic Index 55.00

Half Life

Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 16430

Absorbance 280nm 228.06

Polar Residues 23

number

5

A

3

R

6

N

6

D

8

C

1

E

0

Q

7

G

2

H

4

I

3

L

4

K

0

M

1

F

3

P

1

S

1

T

1

W

7

Y

1

V

Amino Acid Distribution

A: 5 R: 3 N: 6 D: 6 C: 8 E: 1 Q: 0 G: 7 H: 2 I: 4 L: 3 K: 4 M: 0 F: 1 P: 3 S: 1 T: 1 W: 1 Y: 7 V: 1

Length

64

Formula

C312H460N88O94S8

Mass

7204.10

PI

6.84

Net Charge

-0

Boman Index

6.74

Hydrophobicity

-0.542

Evidence 1 Activity

Source & Reference

Database Source NA