TPDB

3D PDB MODEL

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TPDB ID TPDB31437

Activity

Toxicity

Activity_category_statistics

Toxicity and safety peptides

Database_Source

Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 64-aa standard natural toxicity peptide sequence curated from Peptipedia, with an available 3D structural model.

Sequence

GEDGYIADGDNCTYICTFNNYCHALCTDKKGDSGACDWWVPYGVVCWCEDLPTPVPIRGSGKCR

FASTA

>TPDB31437|Toxicity|length=64
GEDGYIADGDNCTYICTFNNYCHALCTDKKGDSGACDWWVPYGVVCWCEDLPTPVPIRGSGKCR

Formula C305H447N81O96S8

Absent Amino Acids QM

Common Amino Acids CG

Mass 7040.87

PI 4.25

Basic Residues 6

Acidic Residues 9

Hydrophobic Residues 20

Net Charge -4

Boman Index 7.52

Hydrophobicity -0.339

Aliphatic Index 53.28

Half Life

Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 22960

Absorbance 280nm 326.10

Polar Residues 21

number

3

A

2

R

3

N

7

D

8

C

2

E

0

Q

8

G

1

H

3

I

2

L

3

K

0

M

1

F

4

P

2

S

4

T

3

W

4

Y

4

V

Amino Acid Distribution

A: 3 R: 2 N: 3 D: 7 C: 8 E: 2 Q: 0 G: 8 H: 1 I: 3 L: 2 K: 3 M: 0 F: 1 P: 4 S: 2 T: 4 W: 3 Y: 4 V: 4

Length

64

Formula

C305H447N81O96S8

Mass

7040.87

PI

4.25

Net Charge

-4

Boman Index

7.52

Hydrophobicity

-0.339

Evidence 1 Activity

Source & Reference

Database Source NA