TPDB

3D PDB MODEL

Drag to rotate. Click a residue or atom to inspect it; the selected residue is highlighted in amber.

TPDB ID TPDB30347

Activity

Toxicity

Activity_category_statistics

Toxicity and safety peptides

Database_Source

Peptipedia ToxinPred 3.0

Sequence_Type

standard

Has_Modification No

Description A 30-aa standard natural toxicity peptide sequence curated from Peptipedia and ToxinPred 3.0, with an available 3D structural model.

Sequence

ECWSQAADCSDGHCCAGRSFSKNCRPYGGD

FASTA

>TPDB30347|Toxicity|length=30
ECWSQAADCSDGHCCAGRSFSKNCRPYGGD

Formula C128H188N42O46S5

Absent Amino Acids ILMTV

Common Amino Acids C

Mass 3211.45

PI 5.32

Basic Residues 4

Acidic Residues 4

Hydrophobic Residues 6

Net Charge -1

Boman Index 5.66

Hydrophobicity -0.833

Aliphatic Index 10.00

Half Life

Mammalian: 1 hour Yeast: 30 min E.coli: >10 hour

Extinction Coefficient Cystines 7240

Absorbance 280nm 225.44

Polar Residues 12

number

3

A

2

R

1

N

3

D

5

C

1

E

1

Q

4

G

1

H

0

I

0

L

1

K

0

M

1

F

1

P

4

S

0

T

1

W

1

Y

0

V

Amino Acid Distribution

A: 3 R: 2 N: 1 D: 3 C: 5 E: 1 Q: 1 G: 4 H: 1 I: 0 L: 0 K: 1 M: 0 F: 1 P: 1 S: 4 T: 0 W: 1 Y: 1 V: 0

Length

30

Formula

C128H188N42O46S5

Mass

3211.45

PI

5.32

Net Charge

-1

Boman Index

5.66

Hydrophobicity

-0.833

Evidence 1 Activity

Source & Reference

Database Source NA