TPDB

3D PDB MODEL

Drag to rotate. Click a residue or atom to inspect it; the selected residue is highlighted in amber.

TPDB ID TPDB30088

Activity

Toxicity

Activity_category_statistics

Toxicity and safety peptides

Database_Source

Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 49-aa standard natural toxicity peptide sequence curated from Peptipedia, with an available 3D structural model.

Sequence

DVRECNINTPGSSWGKCCLTRMCGTMCCARSGCTCVYHWRRGHGCSCPG

FASTA

>TPDB30088|Toxicity|length=49
DVRECNINTPGSSWGKCCLTRMCGTMCCARSGCTCVYHWRRGHGCSCPG

Formula C213H337N73O65S12

Absent Amino Acids QF

Common Amino Acids C

Mass 5345.19

PI 8.15

Basic Residues 8

Acidic Residues 2

Hydrophobic Residues 10

Net Charge +4

Boman Index 4.70

Hydrophobicity -0.298

Aliphatic Index 29.80

Half Life

Mammalian: 1.1 hour Yeast: 3 min E.coli: >10 hour

Extinction Coefficient Cystines 13115

Absorbance 280nm 245.36

Polar Residues 21

number

1

A

5

R

2

N

1

D

10

C

1

E

0

Q

7

G

2

H

1

I

1

L

1

K

2

M

0

F

2

P

4

S

4

T

2

W

1

Y

2

V

Amino Acid Distribution

A: 1 R: 5 N: 2 D: 1 C: 10 E: 1 Q: 0 G: 7 H: 2 I: 1 L: 1 K: 1 M: 2 F: 0 P: 2 S: 4 T: 4 W: 2 Y: 1 V: 2

Length

49

Formula

C213H337N73O65S12

Mass

5345.19

PI

8.15

Net Charge

+4

Boman Index

4.70

Hydrophobicity

-0.298

Evidence 1 Activity

Source & Reference

Database Source NA