TPDB

3D PDB MODEL

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TPDB ID TPDB30079

Activity

Toxicity

Activity_category_statistics

Toxicity and safety peptides

Database_Source

Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 48-aa standard natural toxicity peptide sequence curated from Peptipedia, with an available 3D structural model.

Sequence

DVQDCQVSTPGSKWGRCCLNRVCGPMCCPASHCYCVYQSGKGPTGCSC

FASTA

>TPDB30079|Toxicity|length=48
DVQDCQVSTPGSKWGRCCLNRVCGPMCCPASHCYCVYQSGKGPTGCSC

Formula C205H321N63O66S11

Absent Amino Acids EIF

Common Amino Acids C

Mass 5076.85

PI 7.73

Basic Residues 5

Acidic Residues 2

Hydrophobic Residues 10

Net Charge +2

Boman Index 5.16

Hydrophobicity -0.196

Aliphatic Index 34.38

Half Life

Mammalian: 1.1 hour Yeast: 3 min E.coli: >10 hour

Extinction Coefficient Cystines 9105

Absorbance 280nm 179.34

Polar Residues 23

number

1

A

2

R

1

N

2

D

10

C

0

E

3

Q

6

G

1

H

0

I

1

L

2

K

1

M

0

F

4

P

5

S

2

T

1

W

2

Y

4

V

Amino Acid Distribution

A: 1 R: 2 N: 1 D: 2 C: 10 E: 0 Q: 3 G: 6 H: 1 I: 0 L: 1 K: 2 M: 1 F: 0 P: 4 S: 5 T: 2 W: 1 Y: 2 V: 4

Length

48

Formula

C205H321N63O66S11

Mass

5076.85

PI

7.73

Net Charge

+2

Boman Index

5.16

Hydrophobicity

-0.196

Evidence 1 Activity

Source & Reference

Database Source NA