TPDB

3D PDB MODEL

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TPDB ID TPDB30076

Activity

Toxicity

Activity_category_statistics

Toxicity and safety peptides

Database_Source

Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 62-aa standard natural toxicity peptide sequence curated from Peptipedia, with an available 3D structural model.

Sequence

DVQDCQVSTPGSKWGRCCLNRVCGPMCCPASHCYCVYQSGEGATGVPAEYSCSAHSPFLFSS

FASTA

>TPDB30076|Toxicity|length=62
DVQDCQVSTPGSKWGRCCLNRVCGPMCCPASHCYCVYQSGEGATGVPAEYSCSAHSPFLFSS

Formula C276H414N78O89S10

Absent Amino Acids I

Common Amino Acids CS

Mass 6569.39

PI 6.01

Basic Residues 5

Acidic Residues 4

Hydrophobic Residues 18

Net Charge -1

Boman Index 6.18

Hydrophobicity -0.085

Aliphatic Index 42.42

Half Life

Mammalian: 1.1 hour Yeast: 3 min E.coli: >10 hour

Extinction Coefficient Cystines 10470

Absorbance 280nm 159.38

Polar Residues 27

number

4

A

2

R

1

N

2

D

9

C

2

E

3

Q

6

G

2

H

0

I

2

L

1

K

1

M

2

F

5

P

9

S

2

T

1

W

3

Y

5

V

Amino Acid Distribution

A: 4 R: 2 N: 1 D: 2 C: 9 E: 2 Q: 3 G: 6 H: 2 I: 0 L: 2 K: 1 M: 1 F: 2 P: 5 S: 9 T: 2 W: 1 Y: 3 V: 5

Length

62

Formula

C276H414N78O89S10

Mass

6569.39

PI

6.01

Net Charge

-1

Boman Index

6.18

Hydrophobicity

-0.085

Evidence 1 Activity

Source & Reference

Database Source NA