TPDB

3D PDB MODEL

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TPDB ID TPDB30070

Activity

Toxicity

Activity_category_statistics

Toxicity and safety peptides

Database_Source

Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 80-aa standard natural toxicity peptide sequence curated from Peptipedia, with an available 3D structural model.

Sequence

DVQDCQVSTPGSKWGRCCLNRVCGPMCCPASHCYCVYHRGRATGVPAEYSCSAHSPFFFPHDLALTKQPIKEQPQVLKHV

FASTA

>TPDB30070|Toxicity|length=80
DVQDCQVSTPGSKWGRCCLNRVCGPMCCPASHCYCVYHRGRATGVPAEYSCSAHSPFFFPHDLALTKQPIKEQPQVLKHV

Formula C386H591N113O109S10

Absent Amino Acids

Common Amino Acids C

Mass 8879.23

PI 8.03

Basic Residues 13

Acidic Residues 5

Hydrophobic Residues 25

Net Charge +3

Boman Index 14.54

Hydrophobicity -0.296

Aliphatic Index 56.00

Half Life

Mammalian: 1.1 hour Yeast: 3 min E.coli: >10 hour

Extinction Coefficient Cystines 10470

Absorbance 280nm 117.92

Polar Residues 27

number

5

A

4

R

1

N

3

D

9

C

2

E

5

Q

5

G

5

H

1

I

4

L

4

K

1

M

3

F

8

P

6

S

3

T

1

W

3

Y

7

V

Amino Acid Distribution

A: 5 R: 4 N: 1 D: 3 C: 9 E: 2 Q: 5 G: 5 H: 5 I: 1 L: 4 K: 4 M: 1 F: 3 P: 8 S: 6 T: 3 W: 1 Y: 3 V: 7

Length

80

Formula

C386H591N113O109S10

Mass

8879.23

PI

8.03

Net Charge

+3

Boman Index

14.54

Hydrophobicity

-0.296

Evidence 1 Activity

Source & Reference

Database Source NA